gatk-3.8/java/test/org
chartl 328f89f66a Minor changes to MannWhitneyU:
- Comment fixes to better explain why two-sided test wants to use the LOWER (not higher) value for U
 - Much more direct testing of MWU functions
 - Uniform approximation was always using the < cumulant (sometimes the > cumulant should be used instead)
 - Uniform approximation currently not used (regime in which it was being used was not the right one -- not necessarily bad, but not an improvement over normal)
    + this particular approximation is for major imbalances of the form m >> n. Code may be altered in the future to use this method for this particular regime, if the method's not too slow.
 - Hook into one-sided test.

RegionalAssociationRecalibrator: NaNs were being caused by presence of Infinity and -Infinity values out of the walker. Currently I'm just re-setting them to arbitrary post-whitened values, but the walker will be changed to prevent output of these values, and the "fix" will undone.




git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5539 348d0f76-0448-11de-a6fe-93d51630548a
2011-03-30 17:03:02 +00:00
..
broadinstitute/sting Minor changes to MannWhitneyU: 2011-03-30 17:03:02 +00:00