Eric Banks 3273c20c98 Added integration tests for Tribble-based intervals and fixed up some of the other tests based on some method changes.		2011-10-26 15:29:18 -04:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Initial working version of new interval system in which the argument for -L (and -XL) is allowed to be a rod file (e.g. VCF). Old samtools-style intervals still behave as before. BTI is no longer supported. The merging (union or intersection) of intervals is now consistently applied to all -L (or -XL) intervals, which is nice. More testing needed.	2011-10-26 14:11:49 -04:00
test	Added integration tests for Tribble-based intervals and fixed up some of the other tests based on some method changes.	2011-10-26 15:29:18 -04:00