ebanks e6200fe5b5 don't ignore reads when maxReadLength isn't set ... also, print out LOD score for cleaning git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@771 348d0f76-0448-11de-a6fe-93d51630548a		2009-05-21 19:24:10 +00:00
..
gatk	don't ignore reads when maxReadLength isn't set	2009-05-21 19:24:10 +00:00
indels	@Required / @Allows flags for main arguments.	2009-05-19 23:26:17 +00:00
samples	Hypen-style xml output. Much sexier.	2009-05-08 01:04:40 +00:00
utils	auxiliary class, a simple struct to keep together info like numbers of covered, assessed, ref/variant bases across the sample	2009-05-21 16:30:16 +00:00
ValidateSAM.java	generic declarations added here and there to eliminate a few annoying warnings; no consequential changes	2009-04-02 20:53:01 +00:00