aaron 8515247575 Adding some functions I keep reinventing, especially for testing purposes. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@772 348d0f76-0448-11de-a6fe-93d51630548a		2009-05-21 19:30:44 +00:00
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gatk	QualityUtils: added reverse function to reverse an array of bytes (and not complement it), BaseUtils: split qualToProb into itself and qualToErrProb, CovariateCounterWalker and LogisticRecalibrationWalker: several changes including a properly acocunting (only partly complete) for reversing AND complementing bases that are negative strand, PrintReadsWalker: created option to output reads to a BAM file rather than just to the sceern (useful for creating a downsampled BAM file)	2009-05-21 18:30:45 +00:00
playground	don't ignore reads when maxReadLength isn't set	2009-05-21 19:24:10 +00:00
secondarybase	Fixed the simplest of typos.	2009-05-20 16:00:30 +00:00
utils	Adding some functions I keep reinventing, especially for testing purposes.	2009-05-21 19:30:44 +00:00