gatk3的最后一个经典版本3.8

Mark DePristo 3231031c1a Bugfix for FisherStrand ... -- FisherStrand pValues can sum to slightly greater than 1.0, so they need to be capped to convert to a Phred-scaled quality score		2013-02-16 07:31:38 -08:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected/java	Bugfix for FisherStrand	2013-02-16 07:31:38 -08:00
public	Fix an catastrophic bug (WoW!) in the reference calculation of the UG	2013-02-16 07:31:38 -08:00
settings	Refactored GATKDocs categories some more ( GSATDG-62 )	2013-02-13 16:49:18 -05:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Minor build.xml cleanup post-variant-migration	2013-02-06 11:16:52 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Replace org.broadinstitute.variant with jar built from the Picard repo	2013-02-05 17:24:25 -05:00