Mark DePristo 31f4e5b52e Stop unlimited runtimes in DiffEngine when you have lots of differences ... -- Added a new parameter to control the maximum number of pairwise differences to generate, which previously could expand to a very large number when there were lots of differences among genotypes, resulting in a n^2 algorithm running with n > 1,000,000		2012-05-27 11:17:13 -04:00
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net/sf	GATK tests use public/testdata not /humgen/ as much as possible	2012-05-24 10:58:58 -04:00
org/broadinstitute/sting	Stop unlimited runtimes in DiffEngine when you have lots of differences	2012-05-27 11:17:13 -04:00