depristo bf2e02f472 Generic, easy-to-use variant evaluation Queue script that tests indel and SNP call sets against standard evaluation data sets for sensitivity and specificity ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5391 348d0f76-0448-11de-a6fe-93d51630548a		2011-03-07 18:03:29 +00:00
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carneiro	quick and dirty 'close your eyes' solution to run the papuans over the weekend. Will be properly fixed soon.	2011-03-03 21:42:22 +00:00
chartl	Added in unit tests for the statistics calculated by the test runner; and bug-fixes to the calculations; so we have some assurance that the statistics coming out the back-end are correct.	2011-03-06 16:54:02 +00:00
delangel	Script for calling indels in all phase 1 samples - VQSR part still needs work but raw calling is done	2011-01-22 14:07:10 +00:00
depristo	Generic, easy-to-use variant evaluation Queue script that tests indel and SNP call sets against standard evaluation data sets for sensitivity and specificity	2011-03-07 18:03:29 +00:00
fromer	Added GC content calculator for CNV data	2011-02-14 22:29:55 +00:00
hanna	Refactoring the qscript directory; oneoffs, playground, and core	2011-01-19 15:23:40 +00:00
kshakir	Removed deprecated getDbsnpFile.	2011-02-08 21:12:15 +00:00
rpoplin	Following Ryan's suggestion, I am moving the Methods Development Calling pipeline to the Core.	2011-02-10 17:36:05 +00:00
QTools.q	Generalized association is now working. Output is in a horrific format. Implementation of T-testing. Improvements are to look for classes dynamically (a la VariantEval/VariantAnnotator), beautify output, and do optimizations where they exist.	2011-03-01 01:23:37 +00:00