gatk-3.8/public/scala/qscript/org/broadinstitute/sting/queue/qscripts
Mauricio Carneiro 052a4bdb9c Turning off PHONE HOME option in the MDCP
* MDCP is for internal use and there is no need to report to the Amazon cloud.
   * Reporting to ASW_S3 is not allowing jobs to finish, this is probably a bug.
2012-01-27 11:13:30 -05:00
..
examples Device files like /dev/null are now tracked as special by Queue and are not used to generate .out file paths, scattered into a temporary directory, gathered, deleted, etc. 2012-01-23 16:17:04 -05:00
lib moving the example scala scripts to the qscripts package. 2011-07-01 16:14:59 -04:00
DataProcessingPipeline.scala No more "Q-<pid>@<host>". Generated log file names now use the first output + ".out" (ex. my.vcf.out) or the name of the first QScript plus the order the function was added (ex. MyScript-1.out). The same function added twice with the same outputs will now have the same default logs, meaning the 2nd instance of the function won't be added to the graph twice. 2012-01-08 12:11:55 -05:00
GATKResourcesBundle.scala Replacing Mills file with new gold standard indel set in the resource bundle for release with v1.5 2012-01-17 15:02:45 -05:00
MethodsDevelopmentCallingPipeline.scala Turning off PHONE HOME option in the MDCP 2012-01-27 11:13:30 -05:00
PacbioProcessingPipeline.scala another small bug with the file extension. 2012-01-24 16:14:35 -05:00