gatk-3.8/public/java
Mark DePristo 3164c8dee5 S3 upload now directly creates the XML report in memory and puts that in S3
-- This is a partial fix for the problem with uploading S3 logs reported by Mauricio.  There the problem is that the java.io.tmpdir is not accessible (network just hangs).  Because of that the s3 upload fails because the underlying system uses tmpdir for caching, etc.  As far as I can tell there's no way around this bug -- you cannot overload the java.io.tmpdir programmatically and even if I could what value would we use?  The only solution seems to me is to detect that tmpdir is hanging (how?!) and fail with a meaningful error.
2012-01-29 15:14:58 -05:00
..
config Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
src S3 upload now directly creates the XML report in memory and puts that in S3 2012-01-29 15:14:58 -05:00
test embarrassing fix-up, thanks Khalid. 2012-01-26 19:58:42 -05:00