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Mark DePristo 3144eae51c UnifiedGenotyper bugfix: don't create haplotypes with 0 bases 
-- The PairHMM no longer allows us to create haplotypes with 0 bases.  The UG indel caller used to create such haplotypes.  Now we assign -Double.MAX_VALUE likelihoods to such haplotypes.
-- Add integration test to cover this case, along with private/testdata BAM
-- [Fixes #47523579]
 		2013-04-13 14:57:55 -04:00
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src/org/broadinstitute/sting UnifiedGenotyper bugfix: don't create haplotypes with 0 bases 2013-04-13 14:57:55 -04:00
test/org/broadinstitute/sting UnifiedGenotyper bugfix: don't create haplotypes with 0 bases 2013-04-13 14:57:55 -04:00