Mark DePristo 3144eae51c UnifiedGenotyper bugfix: don't create haplotypes with 0 bases ... -- The PairHMM no longer allows us to create haplotypes with 0 bases. The UG indel caller used to create such haplotypes. Now we assign -Double.MAX_VALUE likelihoods to such haplotypes. -- Add integration test to cover this case, along with private/testdata BAM -- [Fixes #47523579]		2013-04-13 14:57:55 -04:00
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java	UnifiedGenotyper bugfix: don't create haplotypes with 0 bases	2013-04-13 14:57:55 -04:00
scala/test/org/broadinstitute/sting/queue/pipeline/examples	Fix improper dependencies in QScripts used by pipeline tests, and attempt to fix the flawed MisencodedBaseQualityUnitTest	2013-02-27 04:45:53 -05:00