Mark DePristo 71b4bb12b7 Bug fix for incorrect logic in subsetSamples ... -- Now properly handles the case where a sample isn't present (no longer adds a null to the genotypes list) -- Fix for logic failure where if the number of requested samples equals the number of known genotypes then all of the records were returned, which isn't correct when there are missing samples. -- Unit tests added to handle these cases		2011-12-14 16:14:26 -05:00
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alignment	Reinitialize random seed in the bwa bindings from the fixed seed stored in the	2011-07-22 13:41:53 -04:00
commandline	Added ability to specify arguments in files via -args/--arg_file	2011-10-24 15:58:34 -04:00
gatk	Parallelized SelectVariants	2011-12-12 18:41:14 -05:00
jna	Fixed an integration test which crashed on the out of date LSF DRMAA library when run against the obsolete LSF dotkit instead of .combined_LSF_SGE	2011-09-23 21:03:22 -04:00
utils	Bug fix for incorrect logic in subsetSamples	2011-12-14 16:14:26 -05:00
BaseTest.java	Merge branch 'master' of ssh://gsa1/humgen/gsa-scr1/gsa-engineering/git/unstable	2011-12-07 09:03:17 -05:00
MD5DB.java	Merged bug fix from Stable into Unstable	2011-10-13 18:02:06 -04:00
StingTextReporter.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
WalkerTest.java	All MD5 mismatches for test are shown	2011-10-04 15:53:52 -07:00