kshakir 30cf78fdc0 Refactoring for a first version of scatter gather api with basic shell script implementations. ... Modified build script so that queue is cleaned during "ant clean". git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3611 348d0f76-0448-11de-a6fe-93d51630548a		2010-06-22 18:39:20 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	Refactoring for a first version of scatter gather api with basic shell script implementations.	2010-06-22 18:39:20 +00:00
test/org/broadinstitute/sting	Add code to allow reference alleles with 'N' in VariantContext, but not in the alternate allele(s). Also more updates to the VCF 4 code (fixed parsing for files without genotypes).	2010-06-22 18:26:37 +00:00