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gatk-3.8/java/src/org/broadinstitute/sting/gatk/iterators
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hanna 01a3cb27c7 @Required / @Allows flags for main arguments. 
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@751 348d0f76-0448-11de-a6fe-93d51630548a
 		2009-05-19 23:26:17 +00:00
..
BoundedReadIterator.java Switch TraverseByLoci over to new sharding system, and cleanup some code in passing read files along 2009-05-15 21:02:12 +00:00
BoundedReferenceIterator.java Introduce new index-based fasta reader. Clean up MicroManager code, pushing necessary code back into TraversalEngine. 2009-04-24 19:40:21 +00:00
DownsampleIterator.java Switch TraverseByLoci over to new sharding system, and cleanup some code in passing read files along 2009-05-15 21:02:12 +00:00
LocusContextIterator.java LocusIterator iterated through LocusContexts, which was fine until now when we need something 2009-05-12 13:54:57 +00:00
LocusContextIteratorByHanger.java LocusIterator iterated through LocusContexts, which was fine until now when we need something 2009-05-12 13:54:57 +00:00
LocusIterator.java Break locus context data access providers into modular components in preparation for traverse by loci. 2009-05-13 18:51:16 +00:00
MergingSamRecordIterator2.java Switch TraverseByLoci over to new sharding system, and cleanup some code in passing read files along 2009-05-15 21:02:12 +00:00
NullSAMIterator.java @Required / @Allows flags for main arguments. 2009-05-19 23:26:17 +00:00
PushbackIterator.java Enabled iterator() function 2009-04-30 22:15:14 +00:00
ReferenceIterator.java Moved fasta support files into their own package. 2009-04-14 18:13:23 +00:00
SamQueryIterator.java Fixing problems with SAMQueryIterator and reads 2009-04-02 18:04:28 +00:00
SortSamIterator.java Switch TraverseByLoci over to new sharding system, and cleanup some code in passing read files along 2009-05-15 21:02:12 +00:00
StingSAMIterator.java Switch TraverseByLoci over to new sharding system, and cleanup some code in passing read files along 2009-05-15 21:02:12 +00:00
StingSAMIteratorAdapter.java Switch TraverseByLoci over to new sharding system, and cleanup some code in passing read files along 2009-05-15 21:02:12 +00:00
ThreadedIterator.java Make the operation 'read from the iterator and place on the queue' atomic with respect to hasNext(), next(). 2009-04-23 20:16:26 +00:00
VerifyingSamIterator.java Switch TraverseByLoci over to new sharding system, and cleanup some code in passing read files along 2009-05-15 21:02:12 +00:00