rpoplin 30a19a00fe Fix for when running with EMIT_ALL_SITES but not GENOTYPE_GIVEN_ALLELES. Still want to emit a site even when over the deletion fraction for example. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5617 348d0f76-0448-11de-a6fe-93d51630548a		2011-04-12 20:07:06 +00:00
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net/sf	Did some refactoring which broke some unit tests, and then failed to run	2011-04-08 03:31:52 +00:00
org/broadinstitute/sting	Fix for when running with EMIT_ALL_SITES but not GENOTYPE_GIVEN_ALLELES. Still want to emit a site even when over the deletion fraction for example.	2011-04-12 20:07:06 +00:00