gatk-3.8/java
ebanks 30a104228a Don't require entropy reduction when cleaning only at known sites; instead we need to trust the known indels. This will improve consistency between lane-level and aggregated cleaning.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4076 348d0f76-0448-11de-a6fe-93d51630548a
2010-08-22 02:44:38 +00:00
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config Provide a default logger, some config settings, and some doc updates. 2009-04-29 02:06:05 +00:00
src Don't require entropy reduction when cleaning only at known sites; instead we need to trust the known indels. This will improve consistency between lane-level and aggregated cleaning. 2010-08-22 02:44:38 +00:00
test Simple change to allow a list of samples or regular expressions to be provided in a text file (one line per sample). 2010-08-21 00:01:48 +00:00