Mark DePristo 9c7a35f73f HaplotypeCaller no longer creates haplotypes that involve cycles in the SeqGraph ... -- The kbest paths algorithm now takes an explicit set of starting and ending vertices, which is conceptually cleaner and works for either the cycle or no-cycle models. Allowing cycles can be re-enabled with an HC command line switch.		2013-04-08 12:47:50 -04:00
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gatk/walkers	HaplotypeCaller no longer creates haplotypes that involve cycles in the SeqGraph	2013-04-08 12:47:50 -04:00
utils	HaplotypeCaller no longer uses reads with poor likelihoods w.r.t. any haplotype	2013-04-08 12:47:49 -04:00