Mark DePristo 5a54a4155a Change key Haplotype default parameter values ... -- Extension increased to 200 bp -- Min prune factor defaults to 0 -- LD merging enabled by default for complex variants, only when there are 10+ samples for SNP + SNP merging -- Active region trimming enabled by default		2013-04-08 12:47:50 -04:00
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java	Change key Haplotype default parameter values	2013-04-08 12:47:50 -04:00
scala/test/org/broadinstitute/sting/queue/pipeline/examples	Fix improper dependencies in QScripts used by pipeline tests, and attempt to fix the flawed MisencodedBaseQualityUnitTest	2013-02-27 04:45:53 -05:00