gatk3的最后一个经典版本3.8

Mark DePristo 3097936a3d Update GeneralCallingPipeline ... -- Bugfix to puts all files in the subdirectory, regardless of whether the outputDir is provided with a ending / or not -- UG now runs single threaded in GeneralCallingPipeline -- GCP HC only needs 2 GB now		2013-04-08 12:47:50 -04:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected	Change key Haplotype default parameter values	2013-04-08 12:47:50 -04:00
public	Fix residual merge conflicts	2013-04-08 12:47:50 -04:00
settings	Don't allow users to specify keys and IDs that contain angle brackets or equals signs (not allowed in VCF spec).	2013-04-05 00:52:32 -04:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Disable Contracts for Java for tests	2013-04-04 11:56:17 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Brought all of ReduceReads to fastutils	2013-02-23 22:53:23 -05:00