ebanks 3091443dc7 Sweeping changes to the genotype output system, as per several discussions with Matt & Aaron. ... Some things still need to be changed, but it will entail some more design decisions first (which means I get to bug M&A again tomorrow!). git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1930 348d0f76-0448-11de-a6fe-93d51630548a		2009-10-29 03:46:41 +00:00
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gatk	Sweeping changes to the genotype output system, as per several discussions with Matt & Aaron.	2009-10-29 03:46:41 +00:00
playground/gatk/walkers	Reverting rod walkers to use underlying refwalker implementation while we work on ROD2 and reenable the system. Added some serious sparse file parsing to variant eval tests	2009-10-29 01:04:37 +00:00
utils	Sweeping changes to the genotype output system, as per several discussions with Matt & Aaron.	2009-10-29 03:46:41 +00:00
BaseTest.java	Added some code to change the instrumentation for tests.	2009-05-20 05:15:27 +00:00
TrivialInstrumenter.java	fixed a bunch of comments and license headers.	2009-06-10 14:10:46 +00:00
WalkerTest.java	Enabling correct high-performance ROD walker and moved VariantEval over to it. Performance improvements in variantEval in general. See wiki for full description	2009-10-20 23:31:13 +00:00