kshakir 307c8ca027 Created a new playground script for cleaning bams in Firehose. ... Some refactoring of Queue extensions for reusability in scripts. Putting the extensions into the Queue.jar after building them. More updates to GATK walker arguments specifying @Input and @Output for Queue. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4032 348d0f76-0448-11de-a6fe-93d51630548a		2010-08-13 23:52:24 +00:00
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qscript	Created a new playground script for cleaning bams in Firehose.	2010-08-13 23:52:24 +00:00
src	Created a new playground script for cleaning bams in Firehose.	2010-08-13 23:52:24 +00:00
test/org/broadinstitute/sting/queue/util	Exposed CommandLineFunction defaults to the Queue.jar command line (see -help).	2010-08-11 21:58:26 +00:00