hanna cb144734c0 Getting rid of GenotypeWriter interface. Of note: ... - GATKVCFWriter deleted, to be replaced if absolutely necessary when VCF writing goes into Tribble. - VCFWriter is now an interface, for easier redirection. - VCFWriterImpl fleshes out the VCFWriter interface. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4026 348d0f76-0448-11de-a6fe-93d51630548a		2010-08-13 16:33:22 +00:00
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net/sf/picard/reference	IndexedFastaSequenceFile is now in Picard; transitioning to that implementation.	2010-07-01 04:40:31 +00:00
org/broadinstitute/sting	Getting rid of GenotypeWriter interface. Of note:	2010-08-13 16:33:22 +00:00