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gatk3的最后一个经典版本3.8
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257 MiB
Java 95.8%
Scala 3.8%
R 0.2%
JavaScript 0.1%
 
 
 
 
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kshakir 307c8ca027 Created a new playground script for cleaning bams in Firehose. 
Some refactoring of Queue extensions for reusability in scripts.
Putting the extensions into the Queue.jar after building them.
More updates to GATK walker arguments specifying @Input and @Output for Queue.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4032 348d0f76-0448-11de-a6fe-93d51630548a
 		2010-08-13 23:52:24 +00:00
R plot now assumes 1 / 1000 is the min error rate, not 1/100 2010-08-11 14:48:22 +00:00
archive Archiving 2010-07-27 02:47:18 +00:00
c Reduce file handle usage. 2010-01-05 18:03:01 +00:00
doc moved to wiki 2009-07-22 16:35:23 +00:00
java Created a new playground script for cleaning bams in Firehose. 2010-08-13 23:52:24 +00:00
matlab Another matlab script -- this time for making power and coverage plots over a specific gene region. Lots of fun file reading, string manipulation, and exploration of the set() function 2009-11-30 20:02:25 +00:00
packages Created a new playground script for cleaning bams in Firehose. 2010-08-13 23:52:24 +00:00
perl no INFO output now that it's the default 2010-08-11 18:56:28 +00:00
python now support -o output option, useful for pipelines 2010-08-06 14:57:04 +00:00
ruby Adding the ruby directory, and a simple script to restart Bamboo 2009-12-03 22:48:48 +00:00
scala Created a new playground script for cleaning bams in Firehose. 2010-08-13 23:52:24 +00:00
settings Changed logging level to default at INFO instead of WARN. 2010-08-09 16:42:48 +00:00
shell Useful script to see the status of gsa computing resources. Crontab'd and will be arriving as email at 8 am 2010-08-07 12:36:28 +00:00
testdata and add changes to the vcf used in testing 2010-06-25 02:56:02 +00:00
LICENSE Adding a license to the root directory in case BOSC checks for one. Has the 2010-04-20 16:04:29 +00:00
build.xml Created a new playground script for cleaning bams in Firehose. 2010-08-13 23:52:24 +00:00
ivy.xml Changed logging level to default at INFO instead of WARN. 2010-08-09 16:42:48 +00:00