depristo 5b47c5ab6c fixing kiran's busted build ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@686 348d0f76-0448-11de-a6fe-93d51630548a		2009-05-12 21:29:04 +00:00
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AbstractFirecrestFileParser.java	Moved secondary base stuff out of playground for the purpose of making it a core utility. Modified package names and imports such that things would build properly.	2009-05-12 20:24:18 +00:00
AddFourProbsToSAM.java	Moved secondary base stuff out of playground for the purpose of making it a core utility. Modified package names and imports such that things would build properly.	2009-05-12 20:24:18 +00:00
AnnotateSecondaryBase.java	Fixed an import statement that broke when all the files were moved to this directory.	2009-05-12 20:43:16 +00:00
BasecallingBaseModel.java	Moved secondary base stuff out of playground for the purpose of making it a core utility. Modified package names and imports such that things would build properly.	2009-05-12 20:24:18 +00:00
BasecallingReadModel.java	Moved secondary base stuff out of playground for the purpose of making it a core utility. Modified package names and imports such that things would build properly.	2009-05-12 20:24:18 +00:00
CombineSamAndFourProbs.java	Moved secondary base stuff out of playground for the purpose of making it a core utility. Modified package names and imports such that things would build properly.	2009-05-12 20:24:18 +00:00
FirecrestFileParser.java	Moved secondary base stuff out of playground for the purpose of making it a core utility. Modified package names and imports such that things would build properly.	2009-05-12 20:24:18 +00:00
FirecrestFilenameComparator.java	Moved secondary base stuff out of playground for the purpose of making it a core utility. Modified package names and imports such that things would build properly.	2009-05-12 20:24:18 +00:00
FirecrestReadData.java	Moved secondary base stuff out of playground for the purpose of making it a core utility. Modified package names and imports such that things would build properly.	2009-05-12 20:24:18 +00:00
FourBaseRecaller.java	Moved secondary base stuff out of playground for the purpose of making it a core utility. Modified package names and imports such that things would build properly.	2009-05-12 20:24:18 +00:00
FourIntensity.java	Moved secondary base stuff out of playground for the purpose of making it a core utility. Modified package names and imports such that things would build properly.	2009-05-12 20:24:18 +00:00
FourProb.java	fixing kiran's busted build	2009-05-12 21:29:04 +00:00
MatchSQTagToStrand.java	Moved secondary base stuff out of playground for the purpose of making it a core utility. Modified package names and imports such that things would build properly.	2009-05-12 20:24:18 +00:00