gatk3的最后一个经典版本3.8

Mark DePristo 3060a4a15e Support for list of known CNVs in VariantEval ... -- VariantSummary now includes novelty of CNVs by reciprocal overlap detection using the standard variant eval -knownCNVs argument -- Genericizes loading for intervals into interval tree by chromosome -- GenomeLoc methods for reciprocal overlap detection, with unit tests		2011-11-30 17:05:16 -05:00
public	Support for list of known CNVs in VariantEval	2011-11-30 17:05:16 -05:00
settings	Tribble v42 changes the Codec.canDecode method to take in a String instead of a File; this is something that Jim was adamant about (because Tribble can handle streams other than files). I didn't want the next person who needed to rev Tribble to deal with this change additionally, so I took care of updating the GATK now.	2011-11-28 14:18:28 -05:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
LICENSE	One last test...	2011-06-28 19:18:17 -04:00
build.xml	Extensive unit test for GenotypeContextUnitTest	2011-11-20 18:28:01 -05:00
ivy.xml	Updating the HybridSelectionPipeline for SnpEff 2.0.4 RC3	2011-11-17 14:46:12 -05:00