Eric Banks 305db8c0d1 Total rewrite of the isGATKLite() functionality with help of Khalid/David. PluginManager was not working for us.		2012-07-17 15:11:03 -04:00
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src/org/broadinstitute/sting	Total rewrite of the isGATKLite() functionality with help of Khalid/David. PluginManager was not working for us.	2012-07-17 15:11:03 -04:00
test/org/broadinstitute/sting/gatk/walkers	1) Revert previous change - indel recalibration is turned on by default and users of the Lite version will need to turn it off to avoid a User Error. 2) Implemented the engine.isGATKLite() method.	2012-07-17 12:23:40 -04:00