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Argument.java
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The copyright tag that I copied/pasted from a LaTeX document into IntelliJ had
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2010-04-20 15:26:32 +00:00 |
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ArgumentCollection.java
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The copyright tag that I copied/pasted from a LaTeX document into IntelliJ had
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2010-04-20 15:26:32 +00:00 |
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ArgumentDefinition.java
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Added @Hidden annotation, a way to deliberately exclude experimental fields and
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2010-08-05 02:26:46 +00:00 |
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ArgumentDefinitionGroup.java
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Added @Hidden annotation, a way to deliberately exclude experimental fields and
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2010-08-05 02:26:46 +00:00 |
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ArgumentDefinitions.java
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The copyright tag that I copied/pasted from a LaTeX document into IntelliJ had
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2010-04-20 15:26:32 +00:00 |
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ArgumentException.java
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The copyright tag that I copied/pasted from a LaTeX document into IntelliJ had
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2010-04-20 15:26:32 +00:00 |
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ArgumentIOType.java
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Started path of deprecation of Sting's @Argument by splitting the annotation into @Output and @Input. Anything that's not an @Output should be an @Input.
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2010-06-25 20:51:13 +00:00 |
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ArgumentMatches.java
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The copyright tag that I copied/pasted from a LaTeX document into IntelliJ had
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2010-04-20 15:26:32 +00:00 |
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ArgumentSource.java
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Added @Hidden annotation, a way to deliberately exclude experimental fields and
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2010-08-05 02:26:46 +00:00 |
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ArgumentTypeDescriptor.java
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Added @Hidden annotation, a way to deliberately exclude experimental fields and
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2010-08-05 02:26:46 +00:00 |
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ClassType.java
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Workaround for scala trait erasing parameterized types:
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2010-07-07 03:15:10 +00:00 |
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CommandLineProgram.java
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Coping out and forcing the entire GATK (and associated JVM) to use US English
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2010-08-03 03:48:26 +00:00 |
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CommandLineUtils.java
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Added a generic method for returning the complete command-line used when calling a walker, to be used in the bam/vcf headers. As requested, every possible engine/walker argument is included. I've added it to the Unified Genotyper output, so people can try it out and let me know what they think. Something that needs to be discussed in group meeting: what happens when we merge VCFs? Do we keep all of the command-lines?
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2010-08-08 03:53:07 +00:00 |
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EnumerationArgumentDefault.java
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The copyright tag that I copied/pasted from a LaTeX document into IntelliJ had
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2010-04-20 15:26:32 +00:00 |
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Input.java
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Started path of deprecation of Sting's @Argument by splitting the annotation into @Output and @Input. Anything that's not an @Output should be an @Input.
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2010-06-25 20:51:13 +00:00 |
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Output.java
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Started path of deprecation of Sting's @Argument by splitting the annotation into @Output and @Input. Anything that's not an @Output should be an @Input.
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2010-06-25 20:51:13 +00:00 |
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ParsingEngine.java
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Refactored ArgumentDefinition to absorb functionality from ArgumentDefinition and ArgumentTypeDescriptor.
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2010-06-30 18:37:58 +00:00 |
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ParsingMethod.java
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Fixing command line parsing to accept negative number arguments. Command line definitions must now start with a letter or underscore; previously, they could start with a digit.
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2010-06-21 21:54:31 +00:00 |
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package-info.java
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The copyright tag that I copied/pasted from a LaTeX document into IntelliJ had
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2010-04-20 15:26:32 +00:00 |
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