gatk3的最后一个经典版本3.8

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Eric Banks 300b474c96 Several improvements to the single sample combining steps. 1. updated QualByDepth not to use AD-restricted depth if it is zero. Added unit test this change. 2. Fixed small bug in CombineGVCFs where spanning deletions were not being treated consistently throughout. Added test for this situation. 3. Make sure GenotypeGVCFs puts in the required headers. Updated test files to make sure this is covered. 4. Have GenotypeGVCFs propagate up the MLEAC/AF (which were getting clobbered out). Tests updated to account for this.		2014-02-12 10:15:12 -05:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	Several improvements to the single sample combining steps.	2014-02-12 10:15:12 -05:00
public	Add ability to run *KnowledgeBaseTests to maven	2014-02-11 14:08:24 -05:00
settings	Switched commited dependency repository from ivy to maven.	2014-02-03 13:50:46 -05:00
.gitignore	Rev Picard (public) to 1.107.1676	2014-02-04 22:04:28 -05:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Add ability to run *KnowledgeBaseTests to maven	2014-02-11 14:08:24 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Add ability to run *KnowledgeBaseTests to maven	2014-02-11 14:08:24 -05:00

The Genome Analysis Toolkit