gatk-3.8/public/scala
Mauricio Carneiro efbfdb64fe Qscript to Downsample and analyze an exome BAM
this script downsamples an exome BAM several times and makes a coverage distribution
analysis (of bases that pass filters) as well as haplotype caller calls with a NA12878
Knowledge Base assessment with comparison against multi-sample calling
with the UG.

This script was used for the "downsampling the exome" presentation
2013-10-10 14:37:33 -04:00
..
qscript/org/broadinstitute/sting/queue/qscripts Now that we don't generate dict and fai files, the resource script needs to copy them to the bundle. 2013-05-02 15:18:13 -04:00
src/org/broadinstitute/sting/queue Qscript to Downsample and analyze an exome BAM 2013-10-10 14:37:33 -04:00
test/org/broadinstitute/sting/queue Resolving warnings 2013-09-23 12:42:22 -04:00