rpoplin 2f7892601c Useful debugging argument added to VariantRecalibrator to only use sites whose qual field is above --qual ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4406 348d0f76-0448-11de-a6fe-93d51630548a		2010-10-01 21:08:55 +00:00
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net/sf/picard/reference	Final step in error refactoring. GATK exception is now ReviewedStingException, indicating that this exception is really what one wants. Only use this exception when you have thought about StingException vs. UserException and made a real decision.	2010-09-12 15:07:38 +00:00
org/broadinstitute/sting	Useful debugging argument added to VariantRecalibrator to only use sites whose qual field is above --qual	2010-10-01 21:08:55 +00:00