Mark DePristo 2f4cf82e3b VariantEval cleanup. Added VariantType Stratification ... -- ArrayList are List where possible -- states refactored into VariantStratifier base class (reduces many lines of duplicate code) -- Added VariantType stratification that partitions report by VariantContext.Type		2011-09-07 10:43:53 -04:00
..
R	Bugfix for singleton runs. Now with histograms where possible	2011-09-06 16:54:01 -04:00
c	Reinitialize random seed in the bwa bindings from the fixed seed stored in the	2011-07-22 13:41:53 -04:00
chainFiles	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
doc	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
java	VariantEval cleanup. Added VariantType Stratification	2011-09-07 10:43:53 -04:00
packages	Added edu.mit.broad.picard to Queue packaged jar.	2011-07-23 14:40:29 -04:00
perl	Moving these supported perl scripts to public	2011-07-01 17:26:25 -04:00
scala	Allowing multiple dnsnp and indel files in the DPP	2011-09-02 13:38:47 -04:00
testdata	GZIP VCF for testing	2011-08-19 09:05:39 -04:00