21 lines
1.0 KiB
XML
21 lines
1.0 KiB
XML
<?xml version="1.0" encoding="UTF-8"?>
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<package>
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<name>QualityScoresRecalibration</name>
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<executable>
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<name>QualityScoresRecalibration</name>
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<main-class>org.broadinstitute.sting.gatk.CommandLineGATK</main-class>
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<properties>StingText.properties</properties>
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<dependencies>
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<!-- Quality scores recalibration -->
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<class>org.broadinstitute.sting.gatk.walkers.recalibration.CovariateCounterWalker</class>
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<class>org.broadinstitute.sting.gatk.walkers.recalibration.TableRecalibrationWalker</class>
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<!-- Recalibration Covariates -->
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<class>org.broadinstitute.sting.gatk.walkers.recalibration.DinucCovariate</class>
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<class>org.broadinstitute.sting.gatk.walkers.recalibration.QualityScoreCovariate</class>
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<class>org.broadinstitute.sting.gatk.walkers.recalibration.CycleCovariate</class>
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<class>org.broadinstitute.sting.gatk.walkers.recalibration.ReadGroupCovariate</class>
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<class>org.broadinstitute.sting.gatk.walkers.recalibration.TileCovariate</class>
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</dependencies>
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</executable>
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</package>
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