23 lines
871 B
XML
23 lines
871 B
XML
<?xml version="1.0" encoding="UTF-8"?>
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<!-- NOTE: Uses playground.
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ant clean playground package -Dexecutable=GATK-GSA-Pipeline -->
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<package>
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<name>GATK-GSA-Pipeline</name>
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<executable>
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<name>GATK-GSA-Pipeline</name>
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<main-class>org.broadinstitute.sting.gatk.CommandLineGATK</main-class>
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<properties>StingText.properties</properties>
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<module>QualityScoresRecalibrationModule.xml</module>
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<module>LocalRealignmentAroundIndelsModule.xml</module>
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<module>UnifiedGenotyperModule.xml</module>
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<module>VariantFiltrationModule.xml</module>
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<module>VariantAnnotatorModule.xml</module>
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<module>VariantEvalModule.xml</module>
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<module>FindContaminatingReadGroupsModule.xml</module>
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<dependencies>
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<!-- Filters -->
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<package>org.broadinstitute.sting.gatk.filters</package>
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</dependencies>
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</executable>
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</package>
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