gatk-3.8/java/test/org/broadinstitute/sting/gatk
rpoplin c98df0a862 Updated solid_recal_modes to work with bfast aligned data. Added an integration test that uses the BFAST file provided by TGen.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2630 348d0f76-0448-11de-a6fe-93d51630548a
2010-01-19 21:18:02 +00:00
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arguments Looks bigger than it is: 2010-01-15 00:14:35 +00:00
datasources First successful test of new sharding system prototype. Can traverse over reads from a single 2010-01-15 03:35:55 +00:00
executive Added IterableLocusContextQueue and test. Cleaned up tests, adding BaseTest where it didn't exist. Enhanced test runner to run only classes ending in ...Test.java, so that utility classes can sit alongside the tests but won't be run by JUnit. 2009-05-13 21:32:05 +00:00
io Fix for problem where err stream remapped to output stream in certain cases, (hopefully) completing Matt's hat trick of fail. Thanks, unit tests. 2009-09-16 08:33:56 +00:00
iterators First successful test of new sharding system prototype. Can traverse over reads from a single 2010-01-15 03:35:55 +00:00
refdata moved hard-coded file paths to the oneKGLocation, validationDataLocation, and seqLocation variables setup in the BaseTest. 2009-12-29 07:40:48 +00:00
traversals First successful test of new sharding system prototype. Can traverse over reads from a single 2010-01-15 03:35:55 +00:00
walkers Updated solid_recal_modes to work with bfast aligned data. Added an integration test that uses the BFAST file provided by TGen. 2010-01-19 21:18:02 +00:00