Pierre Lindenbaum a301ba1977 Add read group identifier to column names ... If two SAMReadGroupRecords share the same sample name, the output will contain duplicate column headers. This PR fix the problem.		2016-10-11 18:37:11 -04:00
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VectorPairHMM	Update pom versions to mark the start of GATK 3.7 development	2016-06-01 17:21:48 -04:00
c	After renaming the packages, instead of updating the JNI library used for testing bwa, moving the classes to the archive.	2014-05-19 17:36:41 -04:00
chainFiles	The contig is named MT not M in b36. Delivers PT68890442.	2014-04-08 10:03:47 -04:00
doc	Updated readme in public/doc to just point to the website	2015-03-12 11:52:48 -04:00
external-example	Update pom versions to mark the start of GATK 3.7 development	2016-06-01 17:21:48 -04:00
gatk-engine	Throw an exception if the BQSR input covariants file is not found	2016-08-11 12:46:14 -04:00
gatk-queue	Update pom versions to mark the start of GATK 3.7 development	2016-06-01 17:21:48 -04:00
gatk-queue-extensions-generator	Update pom versions to mark the start of GATK 3.7 development	2016-06-01 17:21:48 -04:00
gatk-queue-extensions-public	Update pom versions to mark the start of GATK 3.7 development	2016-06-01 17:21:48 -04:00
gatk-root	Remove sra group	2016-09-23 17:39:10 -04:00
gatk-tools-public	Add read group identifier to column names	2016-10-11 18:37:11 -04:00
gatk-utils	Backport new AFCalculator	2016-09-21 15:21:56 -04:00
gsalib	Update pom versions to mark the start of GATK 3.7 development	2016-06-01 17:21:48 -04:00
java/config	Refactored maven directories and java packages replacing "sting" with "gatk".	2014-05-19 17:36:39 -04:00
package-tests	Update pom versions to mark the start of GATK 3.7 development	2016-06-01 17:21:48 -04:00
repo	Move htsjdk and picard to version 2.3.0	2016-05-16 14:50:00 -04:00
src/main	Added faster built executable, non-packaged jars.	2014-11-05 00:30:46 +08:00
pom.xml	Update pom versions to mark the start of GATK 3.7 development	2016-06-01 17:21:48 -04:00