zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity
gatk3的最后一个经典版本3.8
186 Commits
1 Branch
0 Tags
257 MiB
Java 95.8%
Scala 3.8%
R 0.2%
JavaScript 0.1%
 
 
 
 
Go to file
jmaguire 2ed63fe17c a bunch of changes that support pools. 
they don't appear to break single sample:

	Allele Frequency Metrics (LOD >= 5)
	-------------------------------------------------
	Total loci                            : 9000
	Total called with confidence          : 8138 (90.42%)
	Number of variants                    : 11 (0.14%) (1/739)
    Fraction of variant sites in dbSNP    : 81.82%



git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@192 348d0f76-0448-11de-a6fe-93d51630548a
 		2009-03-25 18:52:42 +00:00
c Move non-java code out of playground. 2009-03-23 19:31:38 +00:00
doc Changed how the example walker gets run, I'm about to check in the GNU style command line args. 2009-03-22 20:10:17 +00:00
java a bunch of changes that support pools. 2009-03-25 18:52:42 +00:00
python Added Hapmap data track (using rodGFF class for GFF file format) to toolkit as a command line option, Hapmap metrics to AlleleFrequencyMetricsWalker, and a python Geli2GFF file converter. 2009-03-24 03:58:03 +00:00
settings Update picard to work with new samtools. 2009-03-20 21:51:26 +00:00
shell Move non-java code out of playground. 2009-03-23 19:31:38 +00:00
testdata Skeleton of new directory structure. 2009-03-11 20:05:05 +00:00
build.xml Prototype, buggy implementation of walker command-line arguments. Doesn't 2009-03-25 00:12:00 +00:00
ivy.xml Prototype, buggy implementation of walker command-line arguments. Doesn't 2009-03-25 00:12:00 +00:00