Mark DePristo 2ebdff074c Update MD5s for SOLiD recalibration ... -- MD5 db had spelling error; fixed -- Bug in AlignmentUtils resulted in some bases not being color space corrected. The integration test caught the change, and it's clear that the new version is correct, as the prev. version was not considering the last the N qualities for reads with a ND operation.		2011-10-13 18:01:51 -04:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Bug fixes for thread unsafe simple timer and bad Ns treatment in AlignmentUtils	2011-10-13 15:53:12 -04:00
test	Update MD5s for SOLiD recalibration	2011-10-13 18:01:51 -04:00