zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity
gatk-3.8/public/java/test/org/broadinstitute/sting/utils/variantcontext
History
Mark DePristo 2e9ecf639e Generalized interface to LazyGenotypesContext 
-- Now you provide a LazyParsing object
-- LazyGenotypesContext now knows nothing about the VCF parser itself.  The parser holds all of the necessary data to parse the VCF genotypes when necessarily, and the LGC only has a pointer to this object
-- Using new interface added LazyGenotypesContext to unit tests with a simple lazy version
-- Deleted VCFParser interface, as it was no longer necessary
 		2011-11-21 09:30:40 -05:00
..
AlleleUnitTest.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
GenotypeLikelihoodsUnitTest.java Updating MD5 to reflect canonical ordering of calculation 2011-11-19 15:57:33 -05:00
GenotypeUnitTest.java Change interface to getNegLog10PError to getLog10PError 2011-11-18 21:07:30 -05:00
GenotypesContextUnitTest.java Generalized interface to LazyGenotypesContext 2011-11-21 09:30:40 -05:00
VCFJarClassLoadingUnitTest.java Modified the VCFJarClassLoadingUnitTest to play nice with the packaged-jar test targets. 2011-10-25 14:47:15 -04:00
VariantContextBenchmark.java Change interface to getNegLog10PError to getLog10PError 2011-11-18 21:07:30 -05:00
VariantContextUnitTest.java Should have been @BeforeMethod 2011-11-19 16:10:09 -05:00
VariantContextUtilsUnitTest.java Bugfix for pError not being checked correctly in CommonInfo 2011-11-19 15:58:59 -05:00
VariantJEXLContextUnitTest.java Killing the final versions of old new VariantContext interface 2011-11-18 21:32:43 -05:00