gatk3的最后一个经典版本3.8

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Phillip Dexheimer 2e78815055 Added missing arguments to GenotypeGVCFs - New arguments are nda, hets, indelHeterozygosity, stand_call_conf, stand_emit_conf, ploidy, and maxAltAlleles - Addresses PT 70110918 - To do this, moved those arguments out of the StandardCallerArgumentCollection into a new GenotypeCalculationArgumentCollection, which is now included as a member of SCAC		2014-06-16 08:10:54 -04:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	Added missing arguments to GenotypeGVCFs	2014-06-16 08:10:54 -04:00
public	Created a new tool, SiblingIBD, which finds Identical-By-Descent regions in two siblings.	2014-06-13 09:41:37 -04:00
settings/helpTemplates	Replaced local drmaa and Jama artifacts with versions from maven central.	2014-02-22 01:21:35 +08:00
.gitignore	Fixed bug using GraphBased due to infinite likelihoods resulting from the calculation of alignment cost of very long insertion or deletions (done in linear scale)	2014-04-01 16:14:52 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Refactored maven directories and java packages replacing "sting" with "gatk".	2014-05-19 17:36:39 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Fixed GATK docs artifact, moved protected ExampleUG tests.	2014-05-22 21:03:55 -04:00

README.md

The Genome Analysis Toolkit

See http://www.broadinstitute.org/gatk/