gatk3的最后一个经典版本3.8

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Ryan Poplin 2e5f9db758 Raising per-sample limits on the number of reads in ART and HC. -- Active Region Traversal was using per sample limits on the number of reads that were too low, especially now that we are running one sample at a time. This caused issues with high confidence variants being dropped in high coverage data. -- HaplotypeCallerGVCFIntegrationTest PL/annotation changes due to using more reads in those tests -- Removed a CountReadsInActiveRegionsIntegrationTest test for excessive coverage because the read coverage no longer goes over the limits in ART		2015-01-09 11:21:42 -05:00
licensing	Updated license information	2014-10-14 17:10:12 -04:00
protected	Raising per-sample limits on the number of reads in ART and HC.	2015-01-09 11:21:42 -05:00
public	Raising per-sample limits on the number of reads in ART and HC.	2015-01-09 11:21:42 -05:00
settings/helpTemplates	Output JSON version of docs for Galaxy	2014-10-09 06:42:25 -04:00
.gitignore	Fixed bug using GraphBased due to infinite likelihoods resulting from the calculation of alignment cost of very long insertion or deletions (done in linear scale)	2014-04-01 16:14:52 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Added faster built executable, non-packaged jars.	2014-11-05 00:30:46 +08:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Faster builds, with updates to documentation generation.	2014-11-05 00:32:23 +08:00

README.md

The Genome Analysis Toolkit

See http://www.broadinstitute.org/gatk/