gatk3的最后一个经典版本3.8

Go to file

Eric Banks 2e36dd9001 Refactoring of CombineGVCFs to make it run a lot faster. Creating new VariantContexts each time we broke up a block was very expensive because we break up blocks so often. Also, calling into GATKVariantContextUtils.simpleMerge was really hurting performance. MD5 changes because we no longer propogate any INFO fields (except for END) for reference blocks; the tests have the now unused BLOCK_SIZE field that now get dropped.		2014-02-11 03:18:52 -05:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	Refactoring of CombineGVCFs to make it run a lot faster.	2014-02-11 03:18:52 -05:00
public	Merge pull request #499 from broadinstitute/eb_fix_ad_updates	2014-02-09 17:55:00 -05:00
settings	Switched commited dependency repository from ivy to maven.	2014-02-03 13:50:46 -05:00
.gitignore	Rev Picard (public) to 1.107.1676	2014-02-04 22:04:28 -05:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Added a set of serial tests to gatk/queue packages, which runs all tests under their package in one TestNG execution.	2014-02-06 08:25:38 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Added a set of serial tests to gatk/queue packages, which runs all tests under their package in one TestNG execution.	2014-02-06 08:25:38 -05:00

README.md

The Genome Analysis Toolkit

See http://www.broadinstitute.org/gatk/