Eric Banks 2e34ff7692 Merge pull request #563 from broadinstitute/aw_refactor_tribble ... GATK changes to conform to Tribble refactoring as part improving Tabix s...		2014-03-17 13:35:46 -04:00
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VectorPairHMM	Removed g_haplotype* global variables in native code so that it works	2014-03-06 22:08:35 -08:00
c	At chartl's request, add the bwa aln -N and bwa aln -m parameters to the bindings.	2012-01-17 14:47:53 -05:00
chainFiles	…
doc	Fixed issues raised by Appistry QA (mostly small fixes, corrections & clarifications to GATKDocs)	2013-03-12 10:57:14 -04:00
external-example	Update pom versions to mark the start of GATK 3.1 development	2014-03-06 00:05:58 -05:00
gatk-framework	Merge pull request #563 from broadinstitute/aw_refactor_tribble	2014-03-17 13:35:46 -04:00
gatk-package	Unconditionally include all of commons-httpclient in the GATK/Queue jars	2014-03-14 10:50:15 -04:00
gatk-queue-extgen	Update pom versions to mark the start of GATK 3.1 development	2014-03-06 00:05:58 -05:00
gsalib	Update pom versions to mark the start of GATK 3.1 development	2014-03-06 00:05:58 -05:00
java/config	Moved files to maven directories.	2014-02-03 13:50:44 -05:00
package-tests	Rename existing PipelineTests to QueueTests to prepare for upcoming push of new pipeline tests	2014-03-10 21:24:03 -04:00
perl	Fixing the liftover script to not require strict VCF header validation.	2013-11-07 09:02:17 -05:00
queue-framework	Rename existing PipelineTests to QueueTests to prepare for upcoming push of new pipeline tests	2014-03-10 21:24:03 -04:00
queue-package	Unconditionally include all of commons-httpclient in the GATK/Queue jars	2014-03-14 10:50:15 -04:00
repo	GATK changes to conform to Tribble refactoring as part improving Tabix support in Tribble (among other things).	2014-03-17 11:56:22 -04:00
sting-root	GATK changes to conform to Tribble refactoring as part improving Tabix support in Tribble (among other things).	2014-03-17 11:56:22 -04:00
sting-utils	Merge remote-tracking branch 'origin/master' into intel	2014-03-10 14:07:36 -04:00
pom.xml	Rename existing PipelineTests to QueueTests to prepare for upcoming push of new pipeline tests	2014-03-10 21:24:03 -04:00