kshakir 08f0509a5c Disabling the queue/pipeline package by default so that scala code can build. If it's not going to be fixed the package should be removed. If it is going to be fixed this patch to build.xml should be reverted. ... Also added the old model of indel calling to the FCP. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5749 348d0f76-0448-11de-a6fe-93d51630548a		2011-05-04 12:17:33 +00:00
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core	Renaming ContrastiveRecalibrator --> VariantRecalibrator in preparation for move to core	2011-05-03 18:12:47 +00:00
examples	When /etc/mailname is unreadable fall back to the hostname.	2011-04-11 20:22:44 +00:00
lib	Thanks to mark: VCFInfoToTable removed in favor of a more flexible walker. Slight change to the argument structure of the walker to make it play more nicely with Queue: the field list parsing is pushed into the command line system (e.g. the variable is exposed as a List<String> and not a String, so Queue doesn't have to join a list into a string only to have it broken out again. This also allows the user to specify -F field1 -F field2 -F field3 if he/she so desires.	2010-12-15 03:33:36 +00:00
oneoffs	recalibrates a dataset splitting between good and bad regions for comparison (used to be named justRecalibrate)	2011-05-03 21:43:09 +00:00
playground	Disabling the queue/pipeline package by default so that scala code can build. If it's not going to be fixed the package should be removed. If it is going to be fixed this patch to build.xml should be reverted.	2011-05-04 12:17:33 +00:00