gatk-3.8/java
delangel 2df12472c2 One more step in commit to support multi-allelic indel genotyping and processing: utility class that supports multi-allelic genotype likelihoods
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5935 348d0f76-0448-11de-a6fe-93d51630548a
2011-06-03 16:08:29 +00:00
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config Provide a default logger, some config settings, and some doc updates. 2009-04-29 02:06:05 +00:00
src One more step in commit to support multi-allelic indel genotyping and processing: utility class that supports multi-allelic genotype likelihoods 2011-06-03 16:08:29 +00:00
test No one should be calling the createHeader method(s) directly, but instead should be going through the full readHeader method (because it first sets the version); therefore I made them package protected and merged them. Updated the various unit tests that were using createHeader and were dangerously assuming that the header version was defaulting to 4.0 (which it no longer does). 2011-06-03 02:17:37 +00:00