Mark DePristo cb857d1640 AFCalcs must be made by factory method now ... -- AFCalcFactory is the only way to make AFCalcs now. There's a nice ordered enum there describing the models and their ploidy and max alt allele restrictions. The factory makes it easy to create them, and to find models that work for you given your ploidy and max alt alleles. -- AFCalc no longer has UAC constructor -- only AFCalcFactory does. Code cleanup throughout -- Enabling more unit tests, all of which almost pass now (except for IndependentAllelesDiploidExactAFCalc which will be fixed next) -- It's now possible to run the UG / HC with any of the exact models currently in the system. -- Code cleanup throughout the system, reorganizing the unit tests in particular		2012-10-15 07:53:56 -04:00
..
config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	AFCalcs must be made by factory method now	2012-10-15 07:53:56 -04:00
test	Merge branch 'master' of gsa2:/humgen/gsa-scr1/chartl/dev/unstable	2012-10-12 00:48:42 -04:00