gatk3的最后一个经典版本3.8

Eric Banks 2d518f3063 More RR-related updates and tests. ... - ReduceReads by default now sets up-front ReadWalker downsampling to 40x per start position. - This is the value I used in my tests with Picard to show that memory issues pretty much disappeared. - This should hopefully take care of the memory issues being reported on the forum. - Added javadocs to SlidingWindow (the main RR class) to follow GATK conventions. - Added more unit tests to increase coverage of BaseCounts class. - Added more unit tests to test I/D operators in the SlidingWindow class.		2013-02-04 12:57:43 -05:00
licensing	Refrain from pushing symlinks into the repo... not all filesystems treat it correctly	2013-01-22 15:18:19 -07:00
protected/java	More RR-related updates and tests.	2013-02-04 12:57:43 -05:00
public	Fix bad contract implementation	2013-02-03 16:15:14 -05:00
settings	Rev picard, sam-jdk, and tribble	2013-02-01 13:51:30 -05:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Move AWS keys to a resources subdirectory within the phonehome package	2013-01-31 11:56:34 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	ReadBackedPileup cleanup	2013-01-11 15:17:18 -05:00