hanna 2d15891719 Created walkers for alignment, validation. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1945 348d0f76-0448-11de-a6fe-93d51630548a		2009-10-30 15:04:07 +00:00
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alignment	Created walkers for alignment, validation.	2009-10-30 15:04:07 +00:00
gatk	-Have the calculation models determine whether a call passes the lod/confidence thresholds (as opposed to returning everything and letting the UG decide); this way, walkers which call map() will get only the good calls.	2009-10-30 02:35:51 +00:00
playground	Comments for Ryan (which also apply to ReadQualityScoreWalker).	2009-10-30 14:44:04 +00:00
secondarybase	Rev'ing Picard, which includes the update to get all the reads in the query region (GSA-173). With it come a bunch of fixes, including retiring the FourBaseRecaller code, and updated md5 for some walker tests.	2009-09-30 20:37:59 +00:00
utils	-Mark just reminded me: actually force the ref/loc to be immutable	2009-10-29 13:41:53 +00:00