Christopher Hartl 2d093828a4 Final changes to Junky (been frozen for a while, but uncommitted) and the qscript for it. A first cursory implementation of the trellis-based Exact AC-constrained genotyping algorithm in UGE. Nothing calls into it, so this should be entirely safe (and, no surprise, it passes UG integration tests).		2012-01-03 15:33:04 -05:00
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net/sf	Performance improvements for dynamically merging BAMs in read walkers.	2011-12-16 09:37:44 -05:00
org/broadinstitute/sting	Final changes to Junky (been frozen for a while, but uncommitted) and the qscript for it. A first cursory implementation of the trellis-based Exact AC-constrained genotyping algorithm in UGE. Nothing calls into it, so this should be entirely safe (and, no surprise, it passes UG integration tests).	2012-01-03 15:33:04 -05:00