Khalid Shakir 89a581a66f Added ability to specify arguments in files via -args/--arg_file ... Pushing back downsample and read filter args so they show up in getApproximateCommandLineArgs()		2011-10-24 15:58:34 -04:00
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ApplicationDetails.java	Optimize imports run on the whole project, public and private. I just got too tired of all of the unused imports floating around. Confirmed that the system builds after the changes.	2011-07-17 20:29:58 -04:00
DocumentedGATKFeature.java	Final documented version of GATKDoclet and associated classes	2011-08-19 16:52:17 -04:00
DocumentedGATKFeatureHandler.java	Final documented version of GATKDoclet and associated classes	2011-08-19 16:52:17 -04:00
DocumentedGATKFeatureObject.java	Final documented version of GATKDoclet and associated classes	2011-08-19 16:52:17 -04:00
GATKDocUtils.java	Final documented version of GATKDoclet and associated classes	2011-08-19 16:52:17 -04:00
GATKDocWorkUnit.java	New uses DocumentedGATKFeatureObject instead of annotation directly	2011-08-18 12:31:04 -04:00
GATKDoclet.java	Final documented version of GATKDoclet and associated classes	2011-08-19 16:52:17 -04:00
GenericDocumentationHandler.java	Shows "" not empty space when default string value is ""	2011-09-28 11:35:52 -04:00
HelpFormatter.java	Added ability to specify arguments in files via -args/--arg_file	2011-10-24 15:58:34 -04:00
HelpUtils.java	Final documented version of GATKDoclet and associated classes	2011-08-19 16:52:17 -04:00
ResourceBundleExtractorDoclet.java	gatkdoc now generalized to use @Annotation. Multiple subsystems now use annotation to receive docs	2011-07-23 20:00:35 -04:00