chartl 2ca1849df9 Adding HaplotypeScore to the VariantAnnotator package (so it can be used with Firehose) ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3171 348d0f76-0448-11de-a6fe-93d51630548a		2010-04-14 18:37:21 +00:00
..
Aligner.xml	Cleanup and formatting overhaul.	2010-01-21 19:22:56 +00:00
AnalyzeConcordance.xml	Added a playground concordance analyzer for summarizing VariantEval across a group.	2010-02-22 20:28:52 +00:00
AnalyzeCovariates.xml	A few more bug fixes based on extended testing. Sorry, Eric.	2010-01-21 22:12:16 +00:00
CreatePackager.xsl	Tweak the layout of the resulting .tar.bz2 a bit.	2010-01-27 22:07:37 +00:00
FindContaminatingReadGroups.xml	Cleanup and formatting overhaul.	2010-01-21 19:22:56 +00:00
GATK-Picard.xml	A few more bug fixes based on extended testing. Sorry, Eric.	2010-01-21 22:12:16 +00:00
GATKResources.xml	Cleanup and formatting overhaul.	2010-01-21 19:22:56 +00:00
GenomeAnalysisTK.xml	changed the depth of coverage walkers class name, and added a dependency in the packaging system so that RODs will all get imported.	2010-04-02 20:55:19 +00:00
IndelGenotyper.xml	Bringing IndelGenotyper back to life	2010-02-03 20:12:49 +00:00
LocalRealignmentAroundIndels.xml	Since IntervalCleaner is gone for good, it is sensible to update the package to refer to the new IndelRealigner instead	2010-02-24 16:42:56 +00:00
PicardPrivate.xml	Fix for Kiran's sharding issue (Invalid GZIP header). General cleanup of	2010-03-29 03:21:27 +00:00
QualityScoresRecalibration.xml	A few more bug fixes based on extended testing. Sorry, Eric.	2010-01-21 22:12:16 +00:00
UnifiedGenotyper.xml	Cleanup and formatting overhaul.	2010-01-21 19:22:56 +00:00
VariantAnnotator.xml	Adding HaplotypeScore to the VariantAnnotator package (so it can be used with Firehose)	2010-04-14 18:37:21 +00:00
VariantEval.xml	Added VariantEval to the GATK release. Woo hoo.	2010-02-02 02:38:39 +00:00
VariantFiltration.xml	Temporary solution: add the commons logging implementation to the VariantFiltration package. Downstream solution is described in GSA-262.	2010-01-23 01:46:18 +00:00